U may have buried the textures to deep in the pk3, try removing your skies folder and drop them straight into "env" and then adjusting the shader. You can just put an env folder in your pk3, but not in any folders itself, just alongside your maps folder, this is where they are put most often or in a textures subfolder, but only one deep, not two.

Thanx for the reply Stuk@tto but i figured it out.
It was a typo in the shader  

Here is a pic of the map It is not quite done yet though.

Nice sky there bud. got any SPF2000 tanning lotion? j/k
That really looks good.

that level looks really nice.
when abouts could we get our mice on that pretty thang?